Host-microbiome interactions (HMIs) are critical for the modulation of biological processes and are associated with several diseases, and extensive HMI studies have generated large amounts of data. We propose that the logical representation of the knowledge derived from these data and the standardized representation of experimental variables and processes can foster integration of data and reproducibility of experiments and thereby further HMI knowledge discovery. A community-based Ontology of Host-Microbiome Interactions (OHMI) was developed following the OBO Foundry principles. OHMI leverages established (...) ontologies to create logically structured representations of microbiomes, microbial taxonomy, host species, host anatomical entities, and HMIs under different conditions and associated study protocols and types of data analysis and experimental results. (shrink)

Sponges branch basally in the metazoan phylogenetic tree and are believed to be composed of four distinct lineages with still uncertain relationships. Indeed, some molecular studies propose that Homoscleromorpha may be a fourth Sponge lineage, distinct from Demospongiae in which they were traditionally classified. They harbour many features that distinguish them from other sponges and are more evocative of those of the eumetazoans. They are notably the only sponges to possess a basement membrane with collagen IV and specialized cell‐junctions, thus (...) possessing true epithelia. Among Homoscleromorphs, we have chosen Oscarella lobularis as a model species. This common and easily accessible sponge is characterized by relatively simple histology and cell composition, absence of skeleton, and strongly pronounced epithelial structure. In this review, we explore the specific features that make O. lobularis a promising homoscleromorph sponge model for evolutionary and developmental researches. (shrink)

In this essay I examine the criminal defense file. I argue that being a largely neglected “object” of the legal field, upon a close examination, the file discloses its intriguing materiality as what is predicated on the structure of the fold that allows for the objective, virtual, and narrative spheres to overlap in a specific act-object, which, with Gilles Deleuze, I call objectile. A subsequent phenomenological analysis of the legal file as objectile shows how its constitutive features help the attorney (...) shape ordinary matters into plentiful matters, turning the file into a locally designed sign system. Once exposed, this system reveals its relations to the legal system at large, with individual activities, institutional practices, and legal procedures all being a part of a complex manifold that is law. (shrink)

Philosophy distinguishes life in general, inherent in all living things and social life – human life in a society. The last means the numerous relationships of man to nature, society, and all other people. To understand the social life, it should be considered at two levels: first, as everyday life, and, second, as «civilized», much higher according to its contents. The everyday life and the «civilized life» – are interconnected integrally with each other and at the same time are different (...) from each other. Note the primary differences in the most general aspect. The usual everyday life is characterized by thing that people do daily, constantly. It is real, practical, biological-social life of each person: whether a man or a woman, an ordinary man and an eminent person. «The civilized life» is a life of higher level; it is penetrated by the theory, more comprehended and systematized; it is based on scientific and legal laws, philosophical truth and moral categories. Therefore people, on the basis of philosophical and scientific laws, regularities, and tendencies know the ancestral life, evaluate correctly estimate the present life and are able to predict the future life. Laws of everyday and civilized human life have been formulated. (shrink)

Quantitative apparatus for assessing strength of an argument was improved in the article. A probative generalisation and verification of the R.Yanal's algorithm to calculate convergent argument were proposed. The generalization obtained deals with both quantity (or number) and quality (or truth-values) of the argument's reasons.

Traditionally, writing is viewed as a code that stands in one-to-one correspondence to spoken language, which is therefore also viewed as a code. However, this is a delusion, which is shared by educators and has serious consequences for cognition, both on individual and on social levels. Natural linguistic signs characteristic for the activity of languaging and their symbolizations are ontologically different phenomena; speech and writing belong to experiential domains of different dynamics. These dynamics impact differently on the linguistic/behavioral strategies of (...) individuals and communities, viewed as second- and third-order living systems operating in a consensual domain as structure-determined systems. Failure to acknowledge this contributes to the spread of functional illiteracy in modern societies, which may lead to cognitive/communicative dysfunction. Technology-enhanced new literacies challenge the value of traditional written culture, raising questions about the relationship between speech and writing and their roles in human evolution. (shrink)

Counter to the traditional semiotic view of language as an object used in an instrumental function, linguistic semiosis is seen as constitutive of human cognition, accounting for sapience as the ….

Vestiges of the Natural History of Creation by Robert Chambers, a Scottish publisher and popular writer, was one of the most influential evolutionary works in the pre-Darwinian age. This article examines the circumstances in which this treatise was published in Russia in 1863 and went through a second printing in 1868. Vestiges was translated into Russian by Alexander Palkhovsky (1831–1907), a former medical student, ideologically close to the nihilist movement, and was initially printed by the radical publisher Anatoly Cherenin, (...) later prosecuted for his ties with revolutionary circles. Vestiges was translated not from the English original, but from a German translation by Karl Vogt. Given the popularity of German materialism among Russian radicals in the 1860s, association with Vogt's name did much to draw attention to the translation. Contrary to Vogt, who took an anti-evolutionary stance while translating Vestiges, Palkhovsky and other nihilists ardently supported evolution in the hope that it would help them combat religious belief. Praising the author of Vestiges for his evolutionary views, Russian radicals at the same time criticized him for numerous references to God, teleological thinking and blindness to social problems. In their attempts to put Vestiges into service, Russian nihilists were similar to English freethinkers of the 1840s. The study of how Vestiges was read and perceived in Russia provides a better understanding of the cross-cultural reception of evolutionary ideas on the eve of Darwin's Origin of Species. (shrink)

Since an observer arises in the experiential domain of languaging, and because everything said is said by an observer, it would be misleading to refer to a single reality constructed in language. ….

Proof-theoretic semantics (P-tS) is the paradigm of semantics in which meaning in logic is based on proof (as opposed to truth). A particular instance of P-tS for intuitionistic propositional logic (IPL) is its base-extension semantics (B-eS). This semantics is given by a relation called support, explaining the meaning of the logical constants, which is parameterized by systems of rules called bases that provide the semantics of atomic propositions. In this paper, we interpret bases as collections of definite formulae and use (...) the operational view of them as provided by uniform proof-search—the proof-theoretic foundation of logic programming (LP)—to establish the completeness of IPL for the B-eS. This perspective allows negation, a subtle issue in P-tS, to be understood in terms of the negation-as-failure protocol in LP. Specifically, while the denial of a proposition is traditionally understood as the assertion of its negation, in B-eS we may understand the denial of a proposition as the failure to find a proof of it. In this way, assertion and denial are both prime concepts in P-tS. (shrink)

The reductive, as opposed to deductive, view of logic is the form of logic that is, perhaps, most widely employed in practical reasoning. In particular, it is the basis of logic programming. Here, building on the idea of uniform proof in reductive logic, we give a treatment of logic programming for BI, the logic of bunched implications, giving both operational and denotational semantics, together with soundness and completeness theorems, all couched in terms of the resource interpretation of BI’s semantics. We (...) use this set-up as a basis for exploring how coalgebraic semantics can, in contrast to the basic denotational semantics, be used to describe the concrete operational choices that are an essential part of proof-search. The overall aim, toward which this paper can be seen as an initial step, is to develop a uniform, generic, mathematical framework for understanding the relationship between the deductive structure of logics and the control structures of the corresponding reductive paradigm. (shrink)

Biological mimicry is regarded by many as a textbook illustration of Darwin’s idea of evolution by random mutation followed by differential selection of reproductively fit specimens, resulting in gradual phenotypic change in a population. In this paper, I argue that some cases of so-called mimicry are probably merely look-a-likes and do not gain an advantage due to their similarity in appearance to something else. In cases where a similar appearance does provide a benefit, I argue that it is possible that (...) these forms of mimicry were created in a single generation. An interpretive response to an appearance as a sign can make a new structure perform drastically differently in an environment. In such cases, Darwin’s natural selection mechanism only helps to explain gradual the spread of these new forms, not the creation of them. I argue that biosemiosis should be regarded as a much more powerful mechanism for affecting evolutionary trajectories than the gradualist view allows. I focus on two cases of butterfly mimicry: the Viceroy (Nymphalidae: Limenitis archippus) and Monarch (Nymphalidae: Danaus plexippus) butterflies, supposed Müllerian mimics, and deadleaf mimic butterflies (Kallima). (shrink)

We give a novel approach to proving soundness and completeness for a logic (henceforth: the object-logic) that bypasses truth-in-a-model to work directly with validity. Instead of working with specific worlds in specific models, we reason with eigenworlds (i.e., generic representatives of worlds) in an arbitrary model. This reasoning is captured by a sequent calculus for a _meta_-logic (in this case, first-order classical logic) expressive enough to capture the semantics of the object-logic. Essentially, one has a calculus of validity for the (...) object-logic. The method proceeds through the perspective of reductive logic (as opposed to the more traditional paradigm of deductive logic), using the space of reductions as a medium for showing the behavioural equivalence of reduction in the sequent calculus for the object-logic and in the validity calculus. Rather than study the technique in general, we illustrate it for the logic of Bunched Implications (BI), thus IPL and MILL (without negation) are also treated. Intuitively, BI is the free combination of intuitionistic propositional logic and multiplicative intuitionistic linear logic, which renders its meta-theory is quite complex. The literature on BI contains many similar, but ultimately different, algebraic structures and satisfaction relations that either capture only fragments of the logic (albeit large ones) or have complex clauses for certain connectives (e.g., Beth’s clause for disjunction instead of Kripke’s). It is this complexity that motivates us to use BI as a case-study for this approach to semantics. (shrink)

People use social categories to perceive and interact with the social world. Different categorizations often share similar cognitive, affective and behavioral features. This leads to a hypothesis of the common representational forms of social categorization. Studies in social categorization often use the terms “ingroup” and “outgroup” without clear conceptualization of the terms. I argue that the ingroup/outgroup distinction should be treated as an elementary relational ego-centric form of social categorization based on specific cognitive mechanisms. Such an abstract relational form should (...) produce specific effects irrespective of the nature of a particular social category. The article discusses theoretical grounds for this hypothesis as well as empirical evidence from behavioral and brain research. It is argued that what is commonly termed as “ingroup” and “outgroup” can be produced by distinct cognitive operations based on similarity assessment and coalitional computation. (shrink)

Name der Zeitschrift: Byzantinische Zeitschrift Jahrgang: 109 Heft: 2 Seiten: 809-820.

This essay concerns itself with the Lawyer cartoon, a thematic subgenre of the “The New Yorker Magazine” cartoon, which focuses on the legal profession in the US context. An examination of the cultural meaning of this phenomenon is carried out on the strength of ethnography of communication, which discloses the cartoon as a cultural, social and rhetorical artifact. Among the findings of this study are the structural components, functions, and the rules of configuring the Lawyer cartoon toward it becoming a (...) matter of “risibility” as well as a matter of cultural symbolism. By presenting the attorney as an abnormal character with excessive and hypocritical characteristics, the Lawyer cartoon points to the ascriptions of a disrupted self, making the profession appear as fundamentally inauthentic. (shrink)

Dans ce texte de Tchaïanov daté de l’été 1917, qu’une traduction partielle rend ici pour la première fois accessible au lectorat francophone, l’agronome, économiste et spécialiste de l’économie paysanne russe défend un collectivisme fondé sur l’idée d’une résistance de la paysannerie au développement du capitalisme. Ce texte a joué un rôle décisif à la fois dans la polarisation des débats sur le collectivisme en Russie à partir de 1917 et dans l’histoire des réceptions du marxisme dans la sociologie rurale tout (...) au long du XX e siècle. En fondant certaines thèses populistes sur des études empiriques de la situation russe, Tchaïanov a permis le développement d’un « néo-narodnisme écologique » dans les sciences sociales à partir des années 1960. (shrink)

Name der Zeitschrift: Der Islam Jahrgang: 92 Heft: 1 Seiten: 197-246.

This essay is an analytical extension of Roland Barthes’ structural analysis of an excerpt from the Old Testament (Genesis 32: 22–32), known as “The Struggle with the Angel”. It thus continues the search for “the third meaning” of this enigmatic passage. In this essay, “The Struggle with the Angel” is undertaken in the phenomenological (xenological) register which situates it in the liminal sphere at the crossing of disclosure and concealment. Subsequent semiotic analyses of three visual renditions of Genesis 32: 22–32, (...) Rembrandt’s “Jacob’s Struggle with the Angel”, Sir Jacob Epstein’s “Jacob and the Angel”, and Marc Chagall’s “Jacob Wrestling with the Angel”, show the “third meaning” of the passage to be predicated on the foundational relation between naming and facing, pointing to the understanding of “The Struggle” as the face-to-face relationship of love and responsibility grounded in ethics. (shrink)

Biopolitics, originally interpreted as the subfield of political science focusing on biological (evolutionary) factors involved in political behavior, has faced conceptual and organizational differences during the forty-year period of its development. It has recently been redefined as the totality of all applications of biology to social and political concepts, problems and practical issues and concerns. In these new terms, biopolitics represents a promising interdisciplinary area of research, whose potential with respect to political philosophy and political science is exemplified by its (...) application to the following issues: (i) Collective violence (war, terrorism, etc.); (ii) Ethnocentrism; (iii) Hierarchies and networks: and (iv) Neurochemical factors of social behavior. The prerequisite for the successof biopolitics is its collaboration with the humanities and social sciences in investigating the multi-level “Homo politicus”. (shrink)

Our paper examines Gloria Anzaldúa’s critical appropriation of Mexican philosophical sources, especially in the writing of Borderlands/La Frontera. We demonstrate how Anzaldúa developed a transnational Philosophy of Mexicanness, effectively contributing to what has been recently characterized as the “multi-generational project to pursue philosophy from and about Mexican circumstances” (Vargas). More specifically, we recover “La Mexicana en la Chicana” by paying careful attention to Anzaldúa’s Mexican sources, both those she explicitly cites and those we have discovered while conducting archival research using (...) the Gloria Evangelina Anzaldúa Papers from the Benson Latin American Collection at the University of Texas at Austin. The three sections of our paper: 1) define the terms Mexican and philosophy in conversation with Anzaldúa’s work, 2) examine the Mexican philosophical sources that Anzaldúa cites in Borderlands/La Frontera, and 3) present the other major Mexican philosophical influences on Anzaldúa that we have found in her archive. The eight Mexican philosophical sources we discuss here include: José Vasconcelos (1882-1959), Miguel León-Portilla (1926-2019), Juana Armanda Alegría (1938- ), Octavio Paz (1914-1998), Samuel Ramos (1897-1959), Rosario Castellanos (1925-1974), Sor Juana Inés de La Cruz (1648-1695), and Jorge Carrión (1913-2005). (shrink)

This essay suggests that the U.S.-American Pragmatist tradition could be fruitfully reconstructed by way of a dialogue with Latin American Liberation Philosophy. More specifically, I work to establish a common ground for future comparative work by: 1) gathering and interpreting Enrique Dussel’s scattered comments on Pragmatism, 2) showing how the concept of liberation already functions in John Dewey’s Pragmatism, and 3) suggesting reasons for further developing this inter-American philosophical dialogue and debate.

Although research into the biosemiotic mechanisms underlying the purposeful behavior of brainless living systems is extensive, researchers have not adequately described biosemiosis among neurons. As the conscious use of signs is well-covered by the various fields of semiotics, we focus on subconscious sign action. Subconscious semiotic habits, both functional and dysfunctional, may be created and reinforced in the brain not necessarily in a logical manner and not necessarily through repeated reinforcement. We review literature that suggests hypnosis may be effective in (...) changing subconscious dysfunctional habits, and we offer a biosemiotic framework for understanding these results. If it has been difficult to evaluate any psychological approach, including hypnosis, this may be because contemporary neuroscience lacks a theory of the sign. We argue that understanding the fluid nature of representation in biological organisms is prerequisite to understanding the nature of the subconscious and may lead to more effective of treatments for dysfunctional habits developed through personal experience or culture. (shrink)

This article describes my ongoing attempts to more successfully engage the full linguistic repertoires and cultural identities of undergraduate students at a “Hispanic Serving Institution” (HSI) in South Texas by teaching a bilingual Introduction to Latin American Philosophy course in the “Language, Philosophy, and Culture” area of Texas’ General Education Core Curriculum. By uncovering the diverse identities, worldviews, and languages of those who were historically excluded from the Eurocentric discipline of philosophy through the conquest and colonization of the Americas, Latin (...) American philosophers offer us new ways of thinking and living by challenging Anglocentric language, philosophy, and culture. As part of the new B3 (Bilingual, Bicultural, and Biliterate) vision of the University of Texas Rio Grande Valley, the course is designed to draw upon the richly varied bilingualisms and biliteracies of predominantly Latinx students in order to help them honor, theorize, and cultivate their bicultural identities by “philosophizing in tongues” rather than being forced to assimilate to the monolingual and monocultural ideology that prevails across both mainstream Anglophone philosophy and the system of higher education in the United States of America. (shrink)

The article introduces Ilyenkov as an original psychologist, who, based on his Marxist reading of Spinoza, provides a novel solution to the psychophysical problem. Rejecting Pavlov's stimulus-reaction theory, he argues for the unifying concept of "thinking body," which allows him to explain thinking as a mode of the corporeal action in accordance with the universal forms of the world of objects. This understanding transforms psychology from purely magic discipline into scientific theory, which has a solid practical foundation.

Professor Morales’ Coss Dialogue Lecture demonstrates the utility of pragmatism for his work as a social scientist across three projects: 1) field research studying the acephalous and heterogenous social order of Chicago’s Maxwell Street Market; 2) nascent research how unseen religious orders animate the lives of im/migrants and their contributions to food systems; and 3) large-scale longitudinal research on farmers markets using the Metrics + Indicators for Impact (MIFI) toolkit. The first two sections of my paper applaud and build upon (...) Morales’ first two projects, and my extremely brief third section raises some questions about positivist specters that may haunt the MIFI project insofar as it is conceptualized, described, and deployed using the terms favored by mainstream social science. (shrink)

This encyclopedia article outlines the history of Latin American philosophy: the thinking of its indigenous peoples, the debates over conquest and colonization, the arguments for national independence in the eighteenth century, the challenges of nation-building and modernization in the nineteenth century, the concerns over various forms of development in the twentieth century, and the diverse interests in Latin American philosophy during the opening decades of the twenty-first century. Rather than attempt to provide an exhaustive and impossibly long list of scholars’ (...) names and dates, this article outlines the history of Latin American philosophy while trying to provide a meaningful sense of detail by focusing briefly on individual thinkers whose work points to broader philosophical trends that are inevitably more complex and diverse than any encyclopedic treatment can hope to capture. (shrink)

Here we evaluate our current understanding of the function of the nervous system in Hydra, a non‐bilaterian animal which is among the first metazoans that contain neurons. We highlight growing evidence that the nervous system, with its rich repertoire of neuropeptides, is involved in controlling resident beneficial microbes. We also review observations that indicate that microbes affect the animal's behavior by directly interfering with neuronal receptors. These findings provide new insight into the original role of the nervous system, and suggest (...) that it emerged to orchestrate multiple functions including host‐microbiome interactions. The excitement of future research in the Hydra model now relies on uncovering the common rules and principles that govern the interaction between neurons and microbes and the extent to which such laws might apply to other and more complex organisms. (shrink)

The article considers the problem of universal basic income. The author believes that this topic can become one of the most relevant for social-philosophical research. The author notes that although the problem has been of concern to philosophers and scientists for a long time, it has become especially relevant only recently – over the past ten years. The following reasons are given as an explanation: recent experiments on the introduction of a universal basic income in Western countries, the trend toward (...) automation and technologization, the transformation of the economy, which is becoming more and more precarious. The author notes that the topic of universal basic income has become relevant even in Russian science, however, not in social philosophy, as in the West, but mainly in economics. The author argues that, since the discussion about basic income in the economic dimension has already taken place, it should be expanded to the field of social philosophy. To do this, the author raises a number of questions that will shed light on the social-philosophical nature of the problem of universal basic income – freedom, justice, welfare state, etc. Special attention is paid to the curious ideological transformations that became possible by the emergence of topic of basic income. First of all, basic income contributes to the formation of new ideologies, such as post-capitalism. Secondly, basic income itself can be considered as a new ideology, which is a synthesis of other ideological trends – libertarianism, feminism, Marxism, etc. Thirdly, post-capitalism, which emphasizes basic income, opens up much more significant problems than replacing labor and turning all people into a precariat. The author hopes that this paper will serve as the beginning of the discussion of the issue of basic income in the context of social-philosophical knowledge. (shrink)

This essay fills in some historical, conceptual, and pedagogical gaps that appear in the most visible and recent professional efforts to “revive” Philosophy as a Way of Life (PWOL). I present “American Philosophy and Self-Culture” as an advanced undergraduate seminar that broadens who counts in and what counts as philosophy by immersing us in the lives, writings, and practices of seven representative U.S.-American philosophers of self-culture, community-building, and world-changing: Benjamin Franklin (1706–1790), Frederick Douglass (1818–1895), William Ellery Channing (1780–1842), Henry David (...) Thoreau (1817–1862), Margaret Fuller (1810-1850), Henry Bugbee (1915–1999), and Gloria Anzaldúa (1942–2004). Students enter the class with preconceptions about who philosophers are, what they do, how they write, and the languages in which they write. Students walk out with new senses of self, place, and language that emerge through new ways of seeing, doing, and writing philosophy. (shrink)

The structures of specific chromosome regions, centromeres and telomeres, present a number of puzzles. As functions performed by these regions are ubiquitous and essential, their DNA, proteins and chromatin structure are expected to be conserved. Recent studies of centromeric DNA from human, Drosophila and plant species have demonstrated that a hidden universal centromere‐specific sequence is highly unlikely. The DNA of telomeres is more conserved consisting of a tandemly repeated 6–8 bp Arabidopsis‐like sequence in a majority of organisms as diverse as (...) protozoan, fungi, mammals and plants. However, there are alternatives to short DNA repeats at the ends of chromosomes and for telomere elongation by telomerase. Here we focus on the similarities and diversity that exist among the structural elements, DNA sequences and proteins, that make up terminal domains (telomeres and subtelomeres), and how organisms use these in different ways to fulfil the functions of end‐replication and end‐protection. BioEssays 27:685–697, 2005. © 2005 Wiley Periodicals, Inc. (shrink)

Proof-theoretic semantics (P-tS) is the approach to meaning in logic based on _proof_ (as opposed to truth). There are two major approaches to P-tS: proof-theoretic validity (P-tV) and base-extension semantics (B-eS). The former is a semantics of arguments, and the latter is a semantics of logical constants. This paper demonstrates that the B-eS for _intuitionistic propositional logic_ (IPL) encapsulates the declarative content of a version of P-tV based on the elimination rules. This explicates how the B-eS for IPL works, and (...) shows the completeness of this version of P-tV. (shrink)

Proof-theoretic semantics (P-tS) is an innovative approach to grounding logical meaning in terms of proofs rather than traditional truth-conditional semantics. The point is not that one provides a proof system, but rather that one articulates meaning in terms of proofs and provability. To elucidate this paradigm shift, we commence with an introduction that contrasts the fundamental tenets of P-tS with the more prevalent model-theoretic approach to semantics. The contribution of this paper is a P-tS for a substructural logic, intuitionistic multiplicative (...) linear logic (IMLL). Specifically, we meticulously examine and refine the established P-tS for intuitionistic propositional logic. Subsequently, we present two novel and comprehensive forms of P-tS for IMLL. Notably, the semantics for IMLL in this paper embodies its resource interpretation through its number-of-uses reading (restricted to atoms). This stands in contrast to the conventional model-theoretic semantics of the logic, underscoring the value that P-tS brings to substructural logics. (shrink)